MAMMOT - A genomic tiling array design and visualisation tool


 

Main Files

Perl Scripts - Main tiling scripts
Web Site - Web interface for the annotator and viewer (updated 2006-05-03) : Bug fix to chip creation
Species and genomes - SQL tables for species and genomes
Examples - Example data files
Installation instructions - Manual for setting up a local server


Data Files

DROS421_gene_structure.tar.gz - Drosophila melanogaster release 4.21 gene structure (updated 2006-02-21)
DROS421_go.tar.gz - Drosophila melanogaster release 4.21 GO annotation
DROS421_repeats.tar.gz - Drosophila melanogaster release 4.21 repeats

DROS31_gene_structure.tar.gz - Drosophila melanogaster release 3.1 gene structure
DROS31_GO.tar.gz - Drosophila melanogaster release 3.1 GO annotation
DROS31_repeats.tar.gz - Drosophila melanogaster release 3.1 repeats

m33_gene_structure.tar.gz - Mus musculus release 33 gene structure
m33_GO.tar.gz - Mus musculus release 33 GO annotation
m33_repeats.tar.gz - Mus musculus release 33 repeats

HS_NCBI_gene_structure.tar.gz - Homo sapiens NCBI release 35 gene structure
HS_NCBI_GO.tar.gz - Homo sapiens NCBI release 35 GO annotation
HS_NCBI_repeats.tar.gz - Homo sapiens NCBI release 35 repeats

BROADD1_gene_structure.tar.gz - Canis familiaris first release gene structure
BROADD1_repeats.tar.gz - Canis familiaris first release repeats


References

Repeat information has been reformated from that originally available from the UCSC Genome Bioinformatics Site.
Gene structure and GO annotation has been reformated from that originally available from Ensembl
Overlay information code uses Overlib Javascript libraries written by Erik Bosrup.