Main panel. Clicking on a tile displays information about it in the lower pane
PCR Panel - displays information about the PCR product and conditions, primer seqiuences etc.
Blast Panel - displays blastn alignments for the PCR products and primers.
Repeats Panel - displays repeat elements in the tile from RepeatMasker.
Sequence Panel - displays tile sequence. Sequesnce in shown in red are flagged as repeat elements.